Bouncy Castle BC 1.54 - 1.59, BC-FJA 1.0.0, BC-FJA 1.0.1 and earlier have a flaw in the Low-level interface to RSA key pair generator, specifically RSA Key Pairs generated in low-level API with added certainty may have less M-R tests than expected. This appears to be fixed in versions BC 1.60 beta 4 and later, BC-FJA 1.0.2 and later.

BouncyCastle TLS prior to version 1.0.3, when configured to use the JCE (Java Cryptography Extension) for cryptographic functions, provides a weak Bleichenbacher oracle when any TLS cipher suite using RSA key exchange is negotiated. An attacker can recover the private key from a vulnerable application. This vulnerability is referred to as "ROBOT."